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- Institutional Repository Switzerland Compatibility:OpenAIRE PubRepos v4.0Partners:EPFL Multidisciplinary, Biology and Biochemistry, Chemistry and Chemical TechnologyEPFLOAI-PMH URL: https://infoscience.epfl.ch/server/oai/openaire4
Infoscience is the institutional platform of the École Polytechnique Fédérale de Lausanne for disseminating scientific publications and research outputs. It collects, preserves and shares the academic and scientific output of EPFL researchers, teachers and students, making it freely accessible to the largest possible audience.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:CSIC Multidisciplinary, Science General, Agriculture, Food and VeterinaryCSICOAI-PMH URL: https://digital.csic.es/dspace-oai/request
This is the institutional repository of the Spanish National Research Council (CSIC) that provides access to the scientific output produced by CSIC researchers. the interface may be read in English or Spanish.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:Not yet registeredPartners:Universitat de les Illes BalearsUniversitat de les Illes BalearsAll Research products
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:IMDEA Networks InstituteIMDEA Networks InstituteOAI-PMH URL: https://dspace.networks.imdea.org/oai/request
DSpace at IMDEA Networks is a digital repository for IMDEA Networks' research, including peer-reviewed articles, technical reports, theses, annual reports, and more.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:UC MultidisciplinaryUCOAI-PMH URL: https://repositorio.unican.es/oai/openaire4
This site provides access to the research output of the institution. The interface is available in Spanish. Users may set up an RSS feed to be alerted to new content.
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:Plazi GmbH Taxonomy, Biodiversity, CitationPlazi GmbH
TreatmentBank (TB) is a service provided by the Swiss Plazi GmbH to liberate data from scholarly publications, and convert, enhance, link, store, and disseminate it as Findable, Accessible, Interoperable and Reusable (FAIR) data. These data include taxonomic treatments, treatment citations, figures, tables, material citations and bibliographic reference. The data extraction processes can be highly automated to process entire journal back-issues as well as current publications. A quality control (QC) process as well as manual checks produce data fit to become reference deposits of treatments in Biodiversity Literature Repository (BLR), as well as daily uploads of treatment articles data sets to the Global Biodiversity Information Facility (GBIF), with persistent identifiers minted in BLR. Input formats can be printed to born-digital publications. All data are openly accessible in various formats and are searchable. Currently, BLR contains more than 650,000 treatments extracted from 66,000 articles, 400,000 figures and 1,040,000 material citations.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:UB, BSC, Institute for Research in Biomedicine Life Science, Genome annotation, Prediction and recognitionUB,BSC,Institute for Research in Biomedicine
PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor (2017 version).
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:SIB Biology, Bioinformatics, DNA sequenceSIB
The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE Basic (DRIVER OA)Partners:European University of Madrid MultidisciplinaryEuropean University of MadridOAI-PMH URL: http://abacus.universidadeuropea.es/oai/request
This repository provides open access to the work of staff and students of Universidad Europea. the interface is in Spanish and English.
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- Institutional Repository Switzerland Compatibility:OpenAIRE PubRepos v4.0Partners:EPFL Multidisciplinary, Biology and Biochemistry, Chemistry and Chemical TechnologyEPFLOAI-PMH URL: https://infoscience.epfl.ch/server/oai/openaire4
Infoscience is the institutional platform of the École Polytechnique Fédérale de Lausanne for disseminating scientific publications and research outputs. It collects, preserves and shares the academic and scientific output of EPFL researchers, teachers and students, making it freely accessible to the largest possible audience.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:CSIC Multidisciplinary, Science General, Agriculture, Food and VeterinaryCSICOAI-PMH URL: https://digital.csic.es/dspace-oai/request
This is the institutional repository of the Spanish National Research Council (CSIC) that provides access to the scientific output produced by CSIC researchers. the interface may be read in English or Spanish.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:Not yet registeredPartners:Universitat de les Illes BalearsUniversitat de les Illes BalearsAll Research products
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:IMDEA Networks InstituteIMDEA Networks InstituteOAI-PMH URL: https://dspace.networks.imdea.org/oai/request
DSpace at IMDEA Networks is a digital repository for IMDEA Networks' research, including peer-reviewed articles, technical reports, theses, annual reports, and more.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:UC MultidisciplinaryUCOAI-PMH URL: https://repositorio.unican.es/oai/openaire4
This site provides access to the research output of the institution. The interface is available in Spanish. Users may set up an RSS feed to be alerted to new content.
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:Plazi GmbH Taxonomy, Biodiversity, CitationPlazi GmbH
TreatmentBank (TB) is a service provided by the Swiss Plazi GmbH to liberate data from scholarly publications, and convert, enhance, link, store, and disseminate it as Findable, Accessible, Interoperable and Reusable (FAIR) data. These data include taxonomic treatments, treatment citations, figures, tables, material citations and bibliographic reference. The data extraction processes can be highly automated to process entire journal back-issues as well as current publications. A quality control (QC) process as well as manual checks produce data fit to become reference deposits of treatments in Biodiversity Literature Repository (BLR), as well as daily uploads of treatment articles data sets to the Global Biodiversity Information Facility (GBIF), with persistent identifiers minted in BLR. Input formats can be printed to born-digital publications. All data are openly accessible in various formats and are searchable. Currently, BLR contains more than 650,000 treatments extracted from 66,000 articles, 400,000 figures and 1,040,000 material citations.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:UB, BSC, Institute for Research in Biomedicine Life Science, Genome annotation, Prediction and recognitionUB,BSC,Institute for Research in Biomedicine
PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor (2017 version).
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:SIB Biology, Bioinformatics, DNA sequenceSIB
The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:Not yet registeredPartners:Comunidad de MadridComunidad de MadridAll Research products
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE Basic (DRIVER OA)Partners:European University of Madrid MultidisciplinaryEuropean University of MadridOAI-PMH URL: http://abacus.universidadeuropea.es/oai/request
This repository provides open access to the work of staff and students of Universidad Europea. the interface is in Spanish and English.
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