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- Institutional Repository Spain Compatibility:Not yet registeredPartners:ISGlobalISGlobalAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:National Microbiology Data Center, China Science and Technology Resource Sharing Network Life Sciences, Biology, MedicineNational Microbiology Data Center,China Science and Technology Resource Sharing Network
re3data: r3d100013747
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:Carlos III University of Madrid MultidisciplinaryCarlos III University of MadridOAI-PMH URL: https://e-archivo.uc3m.es/dspace-oai/request
This site is an institutional repository providing access to materials produced by the members of the university. The site is supported with background information on Open Access in general, and publisher copyright issues in particular. Registered users on the site can set up email alerts, to notify them of newly added relevant content. The interface is available in Spanish and English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:IBI Life Science, Human Genetics, Biomedical ScienceIBI
re3data: r3d100013301
DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Comparative Genomics, Population Genetics, whole genome sequencing assayNGDC, CNCB / BIG, CAS
Virtual Chinese Genome Database (VCGDB) is a genome database of the Chinese population based on the whole genome sequencing data of 194 individuals. We are unsure when this database was last updated, and as such we have marked this record as Uncertain. Please contact us if you have any information on its current status.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:EMBL-EBI Genomics, Genetic Polymorphism, curated informationEMBL-EBI
re3data: r3d100010814
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
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re3data: r3d100012415
OAI-PMH URL: http://wrap.warwick.ac.uk/cgi/oai2This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:University of Huelva MultidisciplinaryUniversity of HuelvaOAI-PMH URL: http://rabida.uhu.es/oai/driver
This site is an institutional repository which provides open access to the publications produced by the members of the University. The interface is in Spanish.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Oxford Biotherapeutics, Structural Biology, immunoglobulin complex, circulatingUniversity of Oxford
The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:PRBB Life Science, Proteomics, AnnotationPRBB
FCP is a publicly accessible web tool dedicated to analysing the current state and trends on the population of available structures along the classification schemes of enzymes and nuclear receptors, offering both graphical and quantitative data on the degree of functional coverage in that portion of the proteome by existing structures, as well as on the bias observed in the distribution of those structures among proteins.
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- Institutional Repository Spain Compatibility:Not yet registeredPartners:ISGlobalISGlobalAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:National Microbiology Data Center, China Science and Technology Resource Sharing Network Life Sciences, Biology, MedicineNational Microbiology Data Center,China Science and Technology Resource Sharing Network
re3data: r3d100013747
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:Carlos III University of Madrid MultidisciplinaryCarlos III University of MadridOAI-PMH URL: https://e-archivo.uc3m.es/dspace-oai/request
This site is an institutional repository providing access to materials produced by the members of the university. The site is supported with background information on Open Access in general, and publisher copyright issues in particular. Registered users on the site can set up email alerts, to notify them of newly added relevant content. The interface is available in Spanish and English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:IBI Life Science, Human Genetics, Biomedical ScienceIBI
re3data: r3d100013301
DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Comparative Genomics, Population Genetics, whole genome sequencing assayNGDC, CNCB / BIG, CAS
Virtual Chinese Genome Database (VCGDB) is a genome database of the Chinese population based on the whole genome sequencing data of 194 individuals. We are unsure when this database was last updated, and as such we have marked this record as Uncertain. Please contact us if you have any information on its current status.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:EMBL-EBI Genomics, Genetic Polymorphism, curated informationEMBL-EBI
re3data: r3d100010814
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United Kingdom Compatibility:OpenAIRE PubRepos v4.0Partners:University of Warwick MultidisciplinaryUniversity of Warwick
re3data: r3d100012415
OAI-PMH URL: http://wrap.warwick.ac.uk/cgi/oai2This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:University of Huelva MultidisciplinaryUniversity of HuelvaOAI-PMH URL: http://rabida.uhu.es/oai/driver
This site is an institutional repository which provides open access to the publications produced by the members of the University. The interface is in Spanish.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Oxford Biotherapeutics, Structural Biology, immunoglobulin complex, circulatingUniversity of Oxford
The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:PRBB Life Science, Proteomics, AnnotationPRBB
FCP is a publicly accessible web tool dedicated to analysing the current state and trends on the population of available structures along the classification schemes of enzymes and nuclear receptors, offering both graphical and quantitative data on the degree of functional coverage in that portion of the proteome by existing structures, as well as on the bias observed in the distribution of those structures among proteins.
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