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- Data Repository France Compatibility:Not yet registeredPartners:LPL Phylogeny, Metagenomics, GenomicsLPL
Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Ming Chen's Lab, Zhejiang University, Hangzhou, China Life Science, Gene name, DNA sequenceMing Chen's Lab, Zhejiang University, Hangzhou, China
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United States Compatibility:Not yet registeredPartners:Sotheby's Institute of ArtSotheby's Institute of ArtAll Research products
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United States Compatibility:Not yet registeredPartners:Daemen University, Daemen CollegeDaemen University,Daemen CollegeAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:BTI Agriculture, Life Science, Plant BreedingBTI
YamBase is a database containing breeding data for Yam (genus Dioscorea). Yam species that are being used for breeding include Dioscorea rotundata, Dioscorea cayenensis (both are native to Africa and the major cultivated species), Dioscorea aleata (native to Southeast Asia), and Dioscorea praehensilis, as well as several other species. YamBase contains phenotypic and genotypic data, as well as trial metadata from breeding programs in Africa.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Amazon Web Services, Inc. Humanities and Social Sciences, Life Sciences, Natural SciencesAmazon Web Services, Inc.
re3data: r3d100010855
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The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:DGFI-TUM Natural Sciences, Geophysics and Geodesy, Geodesy, Photogrammetry, Remote Sensing, Geoinformatics, CartogaphyDGFI-TUM
re3data: r3d100012166
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- Data Repository France Compatibility:Not yet registeredPartners:LPL Phylogeny, Metagenomics, GenomicsLPL
Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Ming Chen's Lab, Zhejiang University, Hangzhou, China Life Science, Gene name, DNA sequenceMing Chen's Lab, Zhejiang University, Hangzhou, China
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United States Compatibility:Not yet registeredPartners:Daemen University, Daemen CollegeDaemen University,Daemen CollegeAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:BTI Agriculture, Life Science, Plant BreedingBTI
YamBase is a database containing breeding data for Yam (genus Dioscorea). Yam species that are being used for breeding include Dioscorea rotundata, Dioscorea cayenensis (both are native to Africa and the major cultivated species), Dioscorea aleata (native to Southeast Asia), and Dioscorea praehensilis, as well as several other species. YamBase contains phenotypic and genotypic data, as well as trial metadata from breeding programs in Africa.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Amazon Web Services, Inc. Humanities and Social Sciences, Life Sciences, Natural SciencesAmazon Web Services, Inc.
re3data: r3d100010855
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:OSU Life Science, Expression data, RNA sequenceOSU
The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:DGFI-TUM Natural Sciences, Geophysics and Geodesy, Geodesy, Photogrammetry, Remote Sensing, Geoinformatics, CartogaphyDGFI-TUM
re3data: r3d100012166
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