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3,650 Data sources

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  • The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.

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  • MitImpact is a collection of genomic, clinical, and functional annotations for all nucleotide changes that cause non-synonymous substitutions in human mitochondrial protein-coding genes

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  • The site hosts theses and dissertations from the institution. The interface is in Spanish.

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  • University of Groningen institutional repository

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3,650 Data sources
  • more_vert
  • The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.

    more_vert
  • more_vert
  • more_vert
  • MitImpact is a collection of genomic, clinical, and functional annotations for all nucleotide changes that cause non-synonymous substitutions in human mitochondrial protein-coding genes

    more_vert
  • more_vert
  • The site hosts theses and dissertations from the institution. The interface is in Spanish.

    more_vert
  • more_vert
  • University of Groningen institutional repository

    more_vert
  • more_vert
  • chevron_left
  • 5
  • 6
  • 7
  • 8
  • 9
  • chevron_right