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Chalmers Open Digital Repository

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Chalmers University of Technology

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Swedish School of Sport and Health Sciences

Institutional Repository Sweden Compatibility:Not yet registeredPartners:GIH

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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Allosteric Mutation Analysis and Polymorphism of Signaling database
Data Repository Singapore Compatibility:Not yet registeredPartners:BII Life Science, signaling, protein
BII
doi: 10.25504/fairsharing.aie9sa
doi: 10.25504/fairsharing.aie9sa
The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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Lund University Publications
Institutional Repository Sweden Compatibility:Not yet registeredPartners:Lund University
Lund University
This site provides access to the research outputs of the Lund University -student papers. Users may set up RSS feeds to be alerted to new content. The interface is available in English
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Swedish National Data Service

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Swedish National Data Service

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Swedish Meteorological and Hydrological Institute open data
Data Repository Sweden Compatibility:collected from a compatible aggregatorPartners:SMHI Atmospheric Science and Oceanography, Hydrogeology, Hydrology, Limnology, Urban Water Management, Water Chemistry, Integrated Water Resources Management, Water Research
SMHI
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Plant Genome Integrative Explorer
Data Repository Sweden Compatibility:Not yet registeredPartners:UPSC Functional Genomics, Phylogenetics, Bioinformatics
UPSC
doi: 10.25504/fairsharing.bnluyq
doi: 10.25504/fairsharing.bnluyq
The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis and few more plant species. The PlantGenIE platform is based on the GenIE-Sys ( Genome Integrative Explorer System).
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Chalmers Research

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Chalmers University of Technology {NULL}

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Swedish Ocean Archive
Data Repository Sweden Compatibility:Not yet registeredPartners:SMHI Environmental Science, Biodiversity, Marine Biology
SMHI
doi: 10.25504/fairsharing.npf403
doi: 10.25504/fairsharing.npf403
SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data from the seas surrounding Sweden. SHARK is accessed via SHARKweb (for human-readable content) and SHARKdata (for computational access). Content includes marine physical, chemical and biological data collected within Swedish environmental monitoring programs.
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569 Data sources

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Chalmers Open Digital Repository

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Chalmers University of Technology

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Swedish School of Sport and Health Sciences

Institutional Repository Sweden Compatibility:Not yet registeredPartners:GIH

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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Allosteric Mutation Analysis and Polymorphism of Signaling database
Data Repository Singapore Compatibility:Not yet registeredPartners:BII Life Science, signaling, protein
BII
doi: 10.25504/fairsharing.aie9sa
doi: 10.25504/fairsharing.aie9sa
The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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Lund University Publications
Institutional Repository Sweden Compatibility:Not yet registeredPartners:Lund University
Lund University
This site provides access to the research outputs of the Lund University -student papers. Users may set up RSS feeds to be alerted to new content. The interface is available in English
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Swedish National Data Service

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Swedish National Data Service

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Swedish Meteorological and Hydrological Institute open data
Data Repository Sweden Compatibility:collected from a compatible aggregatorPartners:SMHI Atmospheric Science and Oceanography, Hydrogeology, Hydrology, Limnology, Urban Water Management, Water Chemistry, Integrated Water Resources Management, Water Research
SMHI
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Plant Genome Integrative Explorer
Data Repository Sweden Compatibility:Not yet registeredPartners:UPSC Functional Genomics, Phylogenetics, Bioinformatics
UPSC
doi: 10.25504/fairsharing.bnluyq
doi: 10.25504/fairsharing.bnluyq
The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis and few more plant species. The PlantGenIE platform is based on the GenIE-Sys ( Genome Integrative Explorer System).
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Chalmers Research

Institutional Repository Sweden Compatibility:Not yet registeredPartners:Chalmers University of Technology {NULL}

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Swedish Ocean Archive
Data Repository Sweden Compatibility:Not yet registeredPartners:SMHI Environmental Science, Biodiversity, Marine Biology
SMHI
doi: 10.25504/fairsharing.npf403
doi: 10.25504/fairsharing.npf403
SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data from the seas surrounding Sweden. SHARK is accessed via SHARKweb (for human-readable content) and SHARKdata (for computational access). Content includes marine physical, chemical and biological data collected within Swedish environmental monitoring programs.
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SG
SE
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Chalmers Open Digital Repository

Swedish School of Sport and Health Sciences

CUBE-DB

Allosteric Mutation Analysis and Polymorphism of Signaling database

Lund University Publications

Swedish National Data Service

Swedish Meteorological and Hydrological Institute open data

Plant Genome Integrative Explorer

Chalmers Research

Swedish Ocean Archive

Chalmers Open Digital Repository

Swedish School of Sport and Health Sciences

CUBE-DB

Allosteric Mutation Analysis and Polymorphism of Signaling database

Lund University Publications

Swedish National Data Service

Swedish Meteorological and Hydrological Institute open data

Plant Genome Integrative Explorer

Chalmers Research

Swedish Ocean Archive

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SG
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