- GB
- US
- ES
- DE
- CA
- Thematic: No
- GB
- US
- ES
- DE
- CA
- Thematic: No
- Institutional Repository Germany Compatibility:OpenAIRE Basic (DRIVER OA)Partners:University of Kaiserslautern MultidisciplinaryUniversity of KaiserslauternOAI-PMH URL: http://kluedo.ub.uni-kl.de/oai
This site is a university repository providing access to the publication output of the institution. The navigation for this site is well thought out and easy to use. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:Biological Small Angle Scattering Group, EMBL Hamburg Life Science, Molecular biology, Protein structureBiological Small Angle Scattering Group, EMBL Hamburg
re3data: r3d100012273
Curated repository for small angle scattering data and models. SASBDB contains X-ray (SAXS) and neutron (SANS) scattering data from biological macromolecules in solution.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:IBI Life Science, Human Genetics, Biomedical ScienceIBI
re3data: r3d100013301
DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Dermatology, Yale University, New Haven, Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania Computational Biology, Imaging, ligandDepartment of Dermatology, Yale University, New Haven,Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania
(a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:LP DAAC Remote Sensing, Geography, Earth ScienceLP DAAC
The Global Visualization Viewer (GloVis) was created to easily view, order, and download remotely sensed data in the public domain. In GloVis, users may narrow down results, view multiple scenes at once, step through time points, view metadata and download the full-band source imagery.
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For further information contact us at helpdesk@openaire.eu - Data Repository Canada Compatibility:Not yet registeredPartners:Princess Margaret Cancer Centre Epigenomics, Bioinformatics, nucleotidePrincess Margaret Cancer Centre
re3data: r3d100013918
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Germany Compatibility:Not yet registeredPartners:Bayerische Staatsbibliothek München History and ArchaeologyBayerische Staatsbibliothek München
This site is an institutional repository providing access to digitised historical source material from the Bavarian State Library (Bayerische StaatsBibliothek), some dating back to the 1500s. Materials include original magazines, reports, illustrations, photos, dictionaries and encyclopaedias. Users may set up RSS feeds to be alerted to new content. The interface is available in German.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:EMBL-EBI Genomics, Genetic Polymorphism, curated informationEMBL-EBI
re3data: r3d100010814
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United Kingdom Compatibility:OpenAIRE PubRepos v4.0Partners:University of Warwick MultidisciplinaryUniversity of Warwick
re3data: r3d100012415
OAI-PMH URL: http://wrap.warwick.ac.uk/cgi/oai2This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:DSMZ Life Science, Biodiversity, MicrobiologyDSMZ
re3data: r3d100013060
The Bacterial Diversity Metadatabase BacDive is the worldwide largest database for standardized bacterial phenotypic information. Its mission is to mobilize research data on strain level from internal files in culture collections (e.g. CABI, CIP, CCUG, DSMZ) as well as from primary literature and make it freely accessible. Today BacDive offers data on 93,254 bacterial and archaeal strains, including 19,313 type strains and thereby covers approx. 90% of the validly described species. Within over 600 data fields the topics taxonomy, morphology, physiology, origin, molecular data, and cultivation conditions are covered. The database offers systematic access to phenotypic data. BacDive thereby enables queries like "show me all strains that grow under certain conditions” by using the Advanced search or queries like “show me all strains isolated from a marine environment” by using the Isolation source search. With currently 15,357 API® tests for 27,634 strains, BacDive also offers the worldwide largest API® test collection, which can be queried using the API test finder tool.
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- Institutional Repository Germany Compatibility:OpenAIRE Basic (DRIVER OA)Partners:University of Kaiserslautern MultidisciplinaryUniversity of KaiserslauternOAI-PMH URL: http://kluedo.ub.uni-kl.de/oai
This site is a university repository providing access to the publication output of the institution. The navigation for this site is well thought out and easy to use. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:Biological Small Angle Scattering Group, EMBL Hamburg Life Science, Molecular biology, Protein structureBiological Small Angle Scattering Group, EMBL Hamburg
re3data: r3d100012273
Curated repository for small angle scattering data and models. SASBDB contains X-ray (SAXS) and neutron (SANS) scattering data from biological macromolecules in solution.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:IBI Life Science, Human Genetics, Biomedical ScienceIBI
re3data: r3d100013301
DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Dermatology, Yale University, New Haven, Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania Computational Biology, Imaging, ligandDepartment of Dermatology, Yale University, New Haven,Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania
(a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:LP DAAC Remote Sensing, Geography, Earth ScienceLP DAAC
The Global Visualization Viewer (GloVis) was created to easily view, order, and download remotely sensed data in the public domain. In GloVis, users may narrow down results, view multiple scenes at once, step through time points, view metadata and download the full-band source imagery.
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For further information contact us at helpdesk@openaire.eu - Data Repository Canada Compatibility:Not yet registeredPartners:Princess Margaret Cancer Centre Epigenomics, Bioinformatics, nucleotidePrincess Margaret Cancer Centre
re3data: r3d100013918
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Germany Compatibility:Not yet registeredPartners:Bayerische Staatsbibliothek München History and ArchaeologyBayerische Staatsbibliothek München
This site is an institutional repository providing access to digitised historical source material from the Bavarian State Library (Bayerische StaatsBibliothek), some dating back to the 1500s. Materials include original magazines, reports, illustrations, photos, dictionaries and encyclopaedias. Users may set up RSS feeds to be alerted to new content. The interface is available in German.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:EMBL-EBI Genomics, Genetic Polymorphism, curated informationEMBL-EBI
re3data: r3d100010814
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United Kingdom Compatibility:OpenAIRE PubRepos v4.0Partners:University of Warwick MultidisciplinaryUniversity of Warwick
re3data: r3d100012415
OAI-PMH URL: http://wrap.warwick.ac.uk/cgi/oai2This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:DSMZ Life Science, Biodiversity, MicrobiologyDSMZ
re3data: r3d100013060
The Bacterial Diversity Metadatabase BacDive is the worldwide largest database for standardized bacterial phenotypic information. Its mission is to mobilize research data on strain level from internal files in culture collections (e.g. CABI, CIP, CCUG, DSMZ) as well as from primary literature and make it freely accessible. Today BacDive offers data on 93,254 bacterial and archaeal strains, including 19,313 type strains and thereby covers approx. 90% of the validly described species. Within over 600 data fields the topics taxonomy, morphology, physiology, origin, molecular data, and cultivation conditions are covered. The database offers systematic access to phenotypic data. BacDive thereby enables queries like "show me all strains that grow under certain conditions” by using the Advanced search or queries like “show me all strains isolated from a marine environment” by using the Isolation source search. With currently 15,357 API® tests for 27,634 strains, BacDive also offers the worldwide largest API® test collection, which can be queried using the API test finder tool.
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