9,477 Data sources

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Soybean Knowledge Base
Data Repository United States Compatibility:Not yet registeredPartners:MU Life Science, Metabolomics, Computational Biology
MU
doi: 10.25504/fairsharing.cr410r
doi: 10.25504/fairsharing.cr410r
Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about genes/proteins, miRNAs/sRNAs, metabolites, SNPs, plant introduction (PI lines) and traits. It handles the management and integration of soybean genomics and multi-omics data along with gene function annotations, biological pathway and trait information. It has many useful tools including gene family search, multiple gene/metabolite analysis, motif analysis tool, protein 3D structure viewer and data download and upload capacity. It has a user-friendly web interface together with genome browser and pathway viewer, which displays data in an intuitive manner to the soybean researchers, breeders and consumers. The QTLs, SNP, GWAS and traits information is seamlessly integrated in our newly developed suite of tools for the In Silico Breeding Program. It allows integration and extraction of the data in a tabular format as well as graphical visualization in our in-house Chromosome Visualizer. It also supports integration and visualization of Genotype by Sequencing (GBS) data for molecular breeding and phenotypic inferences. In addition, SoyKB now has capacity for incorporation of DNA methylation data and fast neutron mutation datasets. It is also linked seamlessly with P3DB for phosphorylation data. We have also incorporated suite of tools for differential expression analysis for microarray, transcriptomics RNA-seq, proteomics and metabolomics datasets. It includes access to gene lists, Venn diagrams, Volcano plots, functional annotations and pathway analysis. SoyKB is now powered by the iPlant Cyber-Infrastructure. The website is hosted on the iPlant’s advanced computing infrastructure established to leverage the data analysis capabilities.
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Caltech Archives Finding Aids Online

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Loeb Music Library
Data Repository United Kingdom Compatibility:Not yet registeredPartners:Harvard University Library Humanities and Social Sciences, Fine Arts, Music, Theatre and Media Studies, Literary Studies
Harvard University Library
re3data: r3d100010720
re3data: r3d100010720
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Scholars Crossing: The institutional repository of Liberty University

Institutional Repository United States Compatibility:Not yet registeredPartners:Liberty University

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bioRxiv,
Thematic Repository United States Compatibility:Not yet registeredPartners:CSH Biology and Biochemistry, Health and Medicine
CSH
bioRxiv is a free online archive and distribution service for unpublished preprints in the life sciences. It is operated by Cold Spring Harbor Laboratory, a not-for-profit research and educational institution. The interface is in English and it contains RSS feeds to give users access to articles on specific subjects.
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ASU Library Repository Services

Institutional Repository United States Compatibility:Not yet registeredPartners:ASU

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Parkinson's Progression Markers Initiative
Data Repository United States Compatibility:Not yet registeredPartners:LONI Preclinical Studies, Biomedical Science, Imaging
LONI
doi: 10.25504/fairsharing.tamp4p
doi: 10.25504/fairsharing.tamp4p
PPMI is an observational clinical study to verify progression markers in Parkinson’s disease. The study is designed to establish a comprehensive set of clinical, imaging and biosample data that will be used to define biomarkers of PD progression. Once these biomarkers are defined, they can be used in therapeutic studies. The clinical, imaging and biologic data are accessible to researchers in real time through the website. If used as a public resource without login, this resource functions as a dashboard.
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EURECOM Repository
Institutional Repository France Compatibility:OpenAIRE Basic (DRIVER OA)Partners:EURECOM Computers and IT, Social Sciences General
EURECOM
OAI-PMH URL: http://www.eurecom.fr/oai/oai2.php
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ScholarWorks@UARK

Institutional Repository United States Compatibility:Not yet registeredPartners:University of Arkansas at Fayetteville

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Foodbase

Institutional Repository United Kingdom Compatibility:Not yet registeredPartners:FSA

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9,477 Data sources

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Soybean Knowledge Base
Data Repository United States Compatibility:Not yet registeredPartners:MU Life Science, Metabolomics, Computational Biology
MU
doi: 10.25504/fairsharing.cr410r
doi: 10.25504/fairsharing.cr410r
Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about genes/proteins, miRNAs/sRNAs, metabolites, SNPs, plant introduction (PI lines) and traits. It handles the management and integration of soybean genomics and multi-omics data along with gene function annotations, biological pathway and trait information. It has many useful tools including gene family search, multiple gene/metabolite analysis, motif analysis tool, protein 3D structure viewer and data download and upload capacity. It has a user-friendly web interface together with genome browser and pathway viewer, which displays data in an intuitive manner to the soybean researchers, breeders and consumers. The QTLs, SNP, GWAS and traits information is seamlessly integrated in our newly developed suite of tools for the In Silico Breeding Program. It allows integration and extraction of the data in a tabular format as well as graphical visualization in our in-house Chromosome Visualizer. It also supports integration and visualization of Genotype by Sequencing (GBS) data for molecular breeding and phenotypic inferences. In addition, SoyKB now has capacity for incorporation of DNA methylation data and fast neutron mutation datasets. It is also linked seamlessly with P3DB for phosphorylation data. We have also incorporated suite of tools for differential expression analysis for microarray, transcriptomics RNA-seq, proteomics and metabolomics datasets. It includes access to gene lists, Venn diagrams, Volcano plots, functional annotations and pathway analysis. SoyKB is now powered by the iPlant Cyber-Infrastructure. The website is hosted on the iPlant’s advanced computing infrastructure established to leverage the data analysis capabilities.
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Caltech Archives Finding Aids Online

Institutional Repository United States Compatibility:Not yet registeredPartners:CIT

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Loeb Music Library
Data Repository United Kingdom Compatibility:Not yet registeredPartners:Harvard University Library Humanities and Social Sciences, Fine Arts, Music, Theatre and Media Studies, Literary Studies
Harvard University Library
re3data: r3d100010720
re3data: r3d100010720
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Scholars Crossing: The institutional repository of Liberty University

Institutional Repository United States Compatibility:Not yet registeredPartners:Liberty University

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bioRxiv,
Thematic Repository United States Compatibility:Not yet registeredPartners:CSH Biology and Biochemistry, Health and Medicine
CSH
bioRxiv is a free online archive and distribution service for unpublished preprints in the life sciences. It is operated by Cold Spring Harbor Laboratory, a not-for-profit research and educational institution. The interface is in English and it contains RSS feeds to give users access to articles on specific subjects.
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ASU Library Repository Services

Institutional Repository United States Compatibility:Not yet registeredPartners:ASU

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Parkinson's Progression Markers Initiative
Data Repository United States Compatibility:Not yet registeredPartners:LONI Preclinical Studies, Biomedical Science, Imaging
LONI
doi: 10.25504/fairsharing.tamp4p
doi: 10.25504/fairsharing.tamp4p
PPMI is an observational clinical study to verify progression markers in Parkinson’s disease. The study is designed to establish a comprehensive set of clinical, imaging and biosample data that will be used to define biomarkers of PD progression. Once these biomarkers are defined, they can be used in therapeutic studies. The clinical, imaging and biologic data are accessible to researchers in real time through the website. If used as a public resource without login, this resource functions as a dashboard.
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EURECOM Repository
Institutional Repository France Compatibility:OpenAIRE Basic (DRIVER OA)Partners:EURECOM Computers and IT, Social Sciences General
EURECOM
OAI-PMH URL: http://www.eurecom.fr/oai/oai2.php
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ScholarWorks@UARK

Institutional Repository United States Compatibility:Not yet registeredPartners:University of Arkansas at Fayetteville

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Foodbase

Institutional Repository United Kingdom Compatibility:Not yet registeredPartners:FSA

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Soybean Knowledge Base

Caltech Archives Finding Aids Online

Loeb Music Library

Scholars Crossing: The institutional repository of Liberty University

bioRxiv,

ASU Library Repository Services

Parkinson's Progression Markers Initiative

EURECOM Repository

ScholarWorks@UARK

Foodbase

Soybean Knowledge Base

Caltech Archives Finding Aids Online

Loeb Music Library

Scholars Crossing: The institutional repository of Liberty University

bioRxiv,

ASU Library Repository Services

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