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- Data Repository Switzerland Compatibility:Not yet registeredPartners:Plazi GmbH Phylogeny, Biodiversity, Taxonomic classificationPlazi GmbH
The Biodiversity Literature Repository (BLR) is a research infrastructure (RI) comprising the BLR Community on Zenodo at the European Center for Nuclear Research (CERN), and services to search and retrieve the data (Ocellus, Zenodeo API, BLR website). BLR’s focus is on biodiversity data liberated from scholarly publications, and it uses custom metadata linking to external vocabularies covering the needs of the biodiversity community. This includes taxonomic treatment or figures as well as the deposit of the original article annotated with metadata describing the data contained in the articles itself, as well as related identifiers for figures and and treatments therein. The main data import is through TreatmentBank or via publishers such as Pensoft. With over 650,000 deposits, BLR is the single largest community in Zenodo. It’s data is widely reused, for example by the Global Biodiversity Information Facility (GBIF). All data in BLR is published under the CC0 Public Domain Dedication, remaining free for anyone to use, anywhere, for any purpose. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because the content of the database is no longer accessible. We are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.
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Drug Mechanism Database (DrugMechDB) compiles curated mechanism of action linking a drug to a disease. Most drug mechanisms are described simply as a protein target, or a pathway, that then treats the disease. However, there are usually more steps across a biological knowledge graph required to traverse from the target through its mechanism to the reduction of a disease. DrugMechDB catalog a subset of known drug-disease indications as a path through a network of biomedical entities.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Eukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC) Functional Genomics, Comparative Genomics, Structural GenomicsEukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC)
re3data: r3d100012460
PiroplasmaDB is one of the databases that can be accessed through the VEuPathDB portal. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the VEuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
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This site provides access to the research outputs of the University of Nebraska Medical Center. Users may set up RSS feeds to be alerted to new content. The interface is available in English.
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re3data: r3d100010788
The Database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. Such studies include genome-wide association studies, medical sequencing, molecular diagnostic assays, as well as association between genotype and non-clinical traits.
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- Data Repository Switzerland Compatibility:Not yet registeredPartners:Plazi GmbH Phylogeny, Biodiversity, Taxonomic classificationPlazi GmbH
The Biodiversity Literature Repository (BLR) is a research infrastructure (RI) comprising the BLR Community on Zenodo at the European Center for Nuclear Research (CERN), and services to search and retrieve the data (Ocellus, Zenodeo API, BLR website). BLR’s focus is on biodiversity data liberated from scholarly publications, and it uses custom metadata linking to external vocabularies covering the needs of the biodiversity community. This includes taxonomic treatment or figures as well as the deposit of the original article annotated with metadata describing the data contained in the articles itself, as well as related identifiers for figures and and treatments therein. The main data import is through TreatmentBank or via publishers such as Pensoft. With over 650,000 deposits, BLR is the single largest community in Zenodo. It’s data is widely reused, for example by the Global Biodiversity Information Facility (GBIF). All data in BLR is published under the CC0 Public Domain Dedication, remaining free for anyone to use, anywhere, for any purpose. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because the content of the database is no longer accessible. We are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:TSRI Biomedical Science, Drug report, drugTSRI
Drug Mechanism Database (DrugMechDB) compiles curated mechanism of action linking a drug to a disease. Most drug mechanisms are described simply as a protein target, or a pathway, that then treats the disease. However, there are usually more steps across a biological knowledge graph required to traverse from the target through its mechanism to the reduction of a disease. DrugMechDB catalog a subset of known drug-disease indications as a path through a network of biomedical entities.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Eukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC) Functional Genomics, Comparative Genomics, Structural GenomicsEukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC)
re3data: r3d100012460
PiroplasmaDB is one of the databases that can be accessed through the VEuPathDB portal. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the VEuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
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This site provides access to the research outputs of the University of Nebraska Medical Center. Users may set up RSS feeds to be alerted to new content. The interface is available in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:NCBI Biomedical Science, Genetics, EpigeneticsNCBI
re3data: r3d100010788
The Database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. Such studies include genome-wide association studies, medical sequencing, molecular diagnostic assays, as well as association between genotype and non-clinical traits.
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